species:   Fugra
pid:       PID0981
parent:    FgmilR-7dps-95
paralog:   
locus:     NC_026477.1:3141115-3141402
matures:   ['UUUCGUCAGGGCCCCGUGGAACA', 'GGCUAGGGGUUCGGGGUUU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026477.1:3141115-3141402

0 out of bounds
9 alignments
4 proper strand
3 stranded perfect matches

        *********************                                                                                                                                                                                                                                 *************************         
ACCAUUUCUGGGCUAGGGGUUCGGGGUUUUGGGGCGGGAAAGGCGUGAGGUUGGUUCAACUCAACGAGUAUUAAGAAAGGCUUGAAAAGAACAUACUUCACUGGUAGAUGACCGCGCGAACCUUCCGUCAUUGCGAGACUCACGCGGUUCAUCUGUUGCUCGUGCUCGUUAAAGUGUUGCCUGAUACGUUCACCACAGUCUUGGACAUCACCACCGCGGACUAUGUAUCCGCAAUCGUCUUCUUCGCAAACCCAAGUUUCGUCAGGGCCCCGUGGAACAGUUGUCGGU
(((((..(((..((((((((((((.(.(((((((((((.((((((((((((..((((.......(((((..........)))))....))))..)))))))...((((((((((((.((..(((.((....)).)))..)).))))).)))))))..((....))..........(((((..(((((((.......((((((((......)))....)))))))))))).))))).))))).)))))...))))))...).)).))))))).)))..)))..)).)))
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUCGUCAGGGCCCCGUGGAACA--------- l=23 a=0 c
----------GGCUAGGGGUUCGGGGUUU------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=0 c*
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGGACAUCACCACCGCGGACUAU---------------------------------------------------------------- l=24 a=2 ma
----------GGCUAGGGGUUCGGGGUUU------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=0 ma*

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUGGACAUCACCACCGCGGACUAU---------------------------------------------------------------- l=24 a=2 (ma)
----------------------------------------------------------------------------------------------------------------------------------------------------UCAUCUGUUGCUCGUGCUCGa----------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------UGGUAGAUGACCGCGCGAACCUUC------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 

mb-00010
ax-1001011
ku-01
ss-111110001000
fn-001
